Cyanobacterial blooms affect aquatic ecosystems due to their capability of producing cyanotoxins (e.g., microcystins, MC; cylindrospermopsin, CYN) and other bioactive compounds. Filter feeding zooplankton are amongst the first organisms affected and research has mainly focused on their interactions with toxic cyanobacteria. We investigated oxidative stress, biotransformation and energetic responses of Daphnia magna after exposure to cyanobacterial extracts. The physiological and behavioral alterations indicate stress, which may impair overall performance of zooplankton at the environmental realistic chronic exposure scenario.